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| HYPLOSP |
Local structure prediction
can facilitate ab initio structure prediction,
protein threading, and remote homology detection.
However, previous approaches to local structure
prediction suffer from poor accuracy. In this
paper, we propose a knowledge-based prediction
method that assigns a measure called the local
match rate to each position of an amino acid
sequence to estimate the confidence of our approach.
To remedy prediction results with low local
match rates, we use a neural network prediction
method. Then, we have a hybrid prediction method,
HYPLOSP (HYbrid method to Protein LOcal Structure
Prediction) that combines our knowledge-based
method with a neural network method. We test
the method on two different structural alphabets
and evaluate it by QN, which is similar to Q3
in secondary structure prediction. The experimental
results show that our method yields a significant
improvement over previous studies.
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Wen-Lian Hsu
Professor, IEEE Fellow
Research Fellow
Institute of Information Science ,
Academia Sinica, Taipei,
Taiwan, R. O. C. Phone:
886-2-27883799 ext.1804 Fax:
886-2-27824814 E-mail: hsu@iis.sinica.edu.tw
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Ting-Yi Sung
Research Fellow
Institute of Information Science ,
Academia Sinica, Taipei,
Taiwan, R. O. C. Phone:
886-2-27883799 ext.1711 Fax:
886-2-27824814 E-mail:
tsung iis.sinica.edu.tw¡@ |
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