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Selected Publication
Te-Chin Chu, Tsunglin Liu, D.T.
Lee, Greg C. Lee, and Arthur Chun-Chieh Shih*,
"GR-Aligner: an algorithm for aligning pairwise genomic se-quences containing rearrangement events," to appear
in Bioinformatics. (*:
corresponding author)
Yao-Ming Chang, Hsueh-Fen
Juan, Tzu-Ying Lee, Ya-Ya Chang, Yao-Ming Yeh, Wen-Hsiung Li*, and Arthur Chun-Chieh Shih*,
"Prediction of human miRNAs using tissue-selective motifs in 3' UTRs," Proceedings of the National Academy of
Sciences, vol. 105,
no. 44, pp. 17061¡V17066, 2008. (abstract)
(pdf)(*:
corresponding authors)
Arthur Chun-Chieh Shih, Tze-Chang Shiao, Mei-Shang Ho, and Wen-Hsiung Li, "Simultaneous Amino Acid
Substitutions at Antigenic Sites Drive Influenza A Hemagglutinin
Evolution," Proceedings of the
National Academy of Sciences, vol. 104, no. 15, pp. 6283-6288, 2007. (pdf)
Arthur Chun-Chieh Shih, D.T. Lee, Chin-Lin Peng , and Yu-Wei Wu,¡§Phylo-mLogo: An interactive multiple-logo
visualization tool for large-number sequence alignments¡¨, BMC Bioinformatics 2007,
8:63. (pdf)
Arthur Chun-Chieh Shih, D.T.
Lee, Laurent Lin, Chin-Lin Peng , Shiang-Heng Chen, Yu-Wei Wu, Chun-Yi Wong, Meng-Yuan Chou, Tze-Chang Shiao, and Mu-Fen Hsieh,
"SinicView: A visualization environment
for comparisons of multiple nucleotide sequence alignment tools," BMC Bioinformatics 2006, 7:103. (pdf)
Arthur Chun-Chieh Shih and Wen-Hsiung Li, ¡§GS-Aligner: A Novel Tool for Aligning Genomic
Sequences Using Bit-Level Operations,¡¨ Molecular Biology and Evolution,
vol. 20, pp.1299-1309, 2003. (pdf)
Arthur Chun-Chieh Shih, Hong-Yaun Mark Liao, and Chun-Shieh Lu, ¡§Dyadic Wavelet-based Nonlinear Conduction
Equation: Theory and Applications,¡¨ IEEE Trans. on Image Processing,
vol. 12, no.4, p.466-476, 2003. (pdf) (MATLAB
source code)
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